PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014507

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YB

Protein Properties

Length: 225aa MW: 24739.5 Da PI: 8.2196

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014507	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.7	2.5e-56	32	127	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+e+ek Cla014507 32 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 127 89*******************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-54	28	142	IPR009072	Histone-fold
SuperFamily	SSF47113	1.21E-40	34	136	IPR009072	Histone-fold
Pfam	PF00808	2.0E-27	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-19	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-19	84	102	No hit	No description
PRINTS	PR00615	1.1E-19	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSGHKRNFTT TAAAVSPIGS PTSGNISDSS TKEQDRFLPI ANVSRIMKKS LPANAKISKE 60 AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFENYV GPLKIYLNKY 120 RETEEEKHSL ARQDDPSLSP AKSATEQIIG GKSANSVMDF QNFNPGFYSF GNQNQNQGNQ 180 KSFNIIDGVG FGESLRSFNM NGVHENGEGN RARAMAAHLQ QSSGW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-48	32	122	2	92	Transcription factor HapC (Eurofung)
4g92_B	3e-48	32	122	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149164.1	1e-156	PREDICTED: nuclear transcription factor Y subunit B-1-like
Refseq	XP_008453748.1	1e-156	PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A0A0KXV6	1e-154	A0A0A0KXV6_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3BY72	1e-154	A0A1S3BY72_CUCME; nuclear transcription factor Y subunit B-1-like
STRING	XP_008453748.1	1e-155	(Cucumis melo)
STRING	XP_004149164.1	1e-155	(Cucumis sativus)
STRING	XP_004171927.1	1e-155	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-64	nuclear factor Y, subunit B3