PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014493

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MIKC_MADS

Protein Properties

Length: 296aa MW: 32887.6 Da PI: 4.7513

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014493	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	10	59	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s Cla014493 10 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFS 59 79********************************************9997 PP
2	K-box	17.1	2.2e-07	66	134	9	77
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 ++++ e+lqqe+ L+ e++ ++++R + + L+ s e+ + e++L + l +i ++K++ll +++ Cla014493 66 SSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHL 134 67899************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.49E-27	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.053	2	62	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-38	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.65E-36	3	76	No hit	No description
PRINTS	PR00404	8.2E-27	4	24	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	4	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-26	11	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-27	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-27	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MMGRVKLQIK RIENTTNRQV TFSKRRNGLI KKAYELSVLC DIDIALIMFS PSGRLSQFSG 60 RRSPTSSNSN VEELQQEVGT LRHELQLAEQ QLRLFEPDPL SFTSNGEIDS CEKNLLDTLA 120 RITQRKKDLL STHLSPYDRP NGIQLYLDSK DGIPTSFETD VANWLPENGQ NSSQICVASE 180 SSSIPQSGQY PTTVYDQVSQ ATNINVGSCN IGGCDIGIPN DDGYSPWHHN YTTTQLLSSF 240 IPQTSFDTLK HDIGEPCMNT MMSQQQVDSI SNGNQMPLSD GSANYDNGKL PQLNVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
3mu6_A	1e-17	3	59	1	57	Myocyte-specific enhancer factor 2A
3mu6_B	1e-17	3	59	1	57	Myocyte-specific enhancer factor 2A
3mu6_C	1e-17	3	59	1	57	Myocyte-specific enhancer factor 2A
3mu6_D	1e-17	3	59	1	57	Myocyte-specific enhancer factor 2A
6bz1_A	1e-17	2	59	1	58	MEF2 CHIMERA
6bz1_B	1e-17	2	59	1	58	MEF2 CHIMERA
6bz1_C	1e-17	2	59	1	58	MEF2 CHIMERA
6bz1_D	1e-17	2	59	1	58	MEF2 CHIMERA
6c9l_A	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	2	59	1	58	Myocyte-specific enhancer factor 2B
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681882	4e-67	LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBank	LN713262	4e-67	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442144.1	1e-173	PREDICTED: agamous-like MADS-box protein AGL66
TrEMBL	A0A1S3B5T1	1e-172	A0A1S3B5T1_CUCME; agamous-like MADS-box protein AGL66
STRING	XP_008442144.1	1e-173	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-58	AGAMOUS-like 104