PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014441

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 114aa MW: 13337.5 Da PI: 11.0123

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014441	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.2e-31	31	81	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l++m+v+gLt++hvkSHLQ Cla014441 31 PRLRWTPDLHRCFVHAVERLGGEERATPKMVLQIMNVNGLTISHVKSHLQV 81 8************************************************73 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.03	27	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-30	27	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-14	29	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	31	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	32	80	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MRVSRQRVSS SFHDINFKSP MVRPYVRSKM PRLRWTPDLH RCFVHAVERL GGEERATPKM 60 VLQIMNVNGL TISHVKSHLQ VCHGQMYRSS KQEQVTSQGS TFLYFLSQPL IVYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	32	88	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-49	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-49	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022926940.1	1e-61	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3
Refseq	XP_023003720.1	1e-61	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3
Refseq	XP_023518347.1	1e-61	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3
Swissprot	Q700D9	9e-28	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1S4DTE6	6e-60	A0A1S4DTE6_CUCME; probable transcription factor KAN2 isoform X1
STRING	XP_008439998.1	4e-64	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-33	G2-like family protein