PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014396
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 548aa    MW: 60955.8 Da    PI: 6.3234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014396genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.7e-1291795482374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +++L++cA+a++++dl+ a+ +L  l +++s +gdp qRl ay++e+L+arl rs+s +ykal+++e +   sse +++++++++++P++kf++  aN  
  Cla014396 179 QDTLIHCAQAIHDSDLNVATLFLDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPT---SSELMSYMSILFQICPYFKFGYTSANAV 275
                689*****************************************************************9...999************************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+ +e  +HiiDf+i qG Q+++L++ La+Rp+gpp lRiTgv++++s   +   l+ +g++La++A++ g+pf+f++ +a +  ++e ++Lr++pg
  Cla014396 276 IWEAMVNEPIIHIIDFQIAQGSQYIPLIDDLANRPGGPPVLRITGVDDSQSAhaRGGGLQIVGQKLAQLAQSKGIPFQFHA-AAMSGCEVERSNLRIRPG 374
                ************************************************9988889999***********************.899999************ PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                EalaVn+ ++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+yy+a+f+s+++  +r++++ri  E+++++r+ivn+va
  Cla014396 375 EALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVA 474
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg+er+erhe l+kWr+r+++aGF+p p+s++++  +k +lr ++++ yr++e +g+++lgWk+r++ + SaWr
  Cla014396 475 CEGFERVERHELLGKWRMRMRMAGFTPCPMSSSVTGAVKNMLRDFNEN-YRLQEVDGAIYLGWKNRAMATSSAWR 548
                **********************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.755152529IPR005202Transcription factor GRAS
PfamPF035142.0E-126179548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQASQNRQAS SVIHEMYQQS VQEMDPYYLS HFHVLGNHVS PDTSSQGNSV NFSSCKDQFF  60
TLESFPATAD LSACNSPSAV SVLSSRSPFS PQGSQSCSSD QHHSFDNTCG SPLSGCSVTD  120
DDNELKHKLK ELEISLLGPE SDIVDSCYCS FRGGGHRDAS MARRNWNQVV EMIPRLSLQD  180
TLIHCAQAIH DSDLNVATLF LDVLGQMVSV SGDPAQRLGA YLLEGLRARL ERSGSAIYKA  240
LKCEEPTSSE LMSYMSILFQ ICPYFKFGYT SANAVIWEAM VNEPIIHIID FQIAQGSQYI  300
PLIDDLANRP GGPPVLRITG VDDSQSAHAR GGGLQIVGQK LAQLAQSKGI PFQFHAAAMS  360
GCEVERSNLR IRPGEALAVN FPYALHHMPD ESVSTQNHRD RLLRLVKSLS PKVVTIVEQE  420
SNTNTSPFLL RFIETLDYYT AMFESIDVAR SRDDKQRIRA EQHCVARDIV NMVACEGFER  480
VERHELLGKW RMRMRMAGFT PCPMSSSVTG AVKNMLRDFN ENYRLQEVDG AIYLGWKNRA  540
MATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-551815487375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022978037.10.0scarecrow-like protein 13
RefseqXP_022978038.10.0scarecrow-like protein 13
RefseqXP_022978039.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S3B0X00.0A0A1S3B0X0_CUCME; scarecrow-like protein 13
STRINGXP_008440083.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13