PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | G2-like | ||||||||
Protein Properties | Length: 195aa MW: 21125.9 Da PI: 7.9395 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.3e-33 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Cla014367 42 KPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-32 | 39 | 97 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 42 | 97 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.12E-17 | 42 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 44 | 95 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MFPRLVNPDG DIQIHGPRGS VASDLTHSHR GDPCLVLTSD PKPRLRWTAD LHERFVDAVT 60 QLGGAGKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDMGEASKD VNGTEEVQAN 120 LPCQRADCST ESCLTSNESP GGLAMEKSPV ASKKNMVNLD SATASLIWGE AKERIQDANI 180 IQVNHHGVSG CDMWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-115 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-115 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658094.1 | 1e-75 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
TrEMBL | A0A0A0KL09 | 3e-74 | A0A0A0KL09_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S4DTK9 | 3e-74 | A0A1S4DTK9_CUCME; LOW QUALITY PROTEIN: myb family transcription factor APL-like | ||||
STRING | XP_008440945.1 | 5e-75 | (Cucumis melo) | ||||
STRING | XP_004134996.1 | 8e-73 | (Cucumis sativus) | ||||
STRING | XP_004163406.1 | 7e-73 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-43 | G2-like family protein |