PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014366

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 326aa MW: 36077.3 Da PI: 8.7863

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014366	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.2e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cla014366 49 KQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.699	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-17	48	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-32	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-26	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	9.1E-24	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MFQQQSAHNS SFLQNNLLVR DKHIPSDACL MDPAKGNNST SNNPNLASKQ RLRWTHDLHE 60 RFVNAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK 120 DSNDILSNID GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ 180 KLSGVLSGAP VASAFSAPAS GDNCPEADKN DPPTPAPTSE FPRQEKPSKE HAQAKSVSID 240 DSFSSHHEPL TPDSGCHSSR SESPRPVKKQ RQYRDGAFAK SEMILAHQIL ESSLNSTHKE 300 SRSVFPAREK FDPSSGISIG DDNQLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU284118	0.0	EU284118.1 Cucumis sativus putative myb family transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023544166.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_023544167.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_023544169.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-120	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1S3B2B2	0.0	A0A1S3B2B2_CUCME; protein PHR1-LIKE 1-like
STRING	XP_008440942.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-94	G2-like family protein