PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014280

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WOX

Protein Properties

Length: 310aa MW: 34598.8 Da PI: 7.0607

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014280	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.2e-20	28	89	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L+el+++ r psa+++++++++l +++ ++V++WFqN++a+e++ Cla014280 28 STRWTPTTDQIRILKELYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89 58**************98678***********************************97 PP
2	Wus_type_Homeobox	114.3	6e-37	27	91	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Cla014280 27 SSTRWTPTTDQIRILKELYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-11	23	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.414	24	90	IPR001356	Homeobox domain
SMART	SM00389	1.5E-5	26	94	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-17	29	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-7	29	89	IPR009057	Homeodomain-like
CDD	cd00086	2.19E-7	29	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDHPKQQQQQ GNDQEGSNGK GFLCRQSSTR WTPTTDQIRI LKELYYNNGV RSPSADQIQR 60 ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTTTTATS TASSPTTDHH LHHQQQQQFS 120 LPKQQQQISS TINNNNNNWK PEDCSSSSPL FHNKYPPNIS PAAPSSSVMV AVGHMGNYGY 180 GSATFENSFR ECSISSGGSS SVVGYRSHNM GSWIGVDPYS SPAAGANVFE KTKYVEESIE 240 DEDQEIETLP LFPIHGDRNL GGFCSMKPEY SDSYYTTTWY GRSDDGAAGS RASLELSLNS 300 YAAISPDDGM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	2e-75	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	2e-75	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134866.1	1e-154	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	1e-80	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A0A0KH83	1e-153	A0A0A0KH83_CUCSA; Uncharacterized protein
STRING	XP_004158873.1	1e-154	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-41	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]