PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014264

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C3H

Protein Properties

Length: 478aa MW: 52129.5 Da PI: 7.4993

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014264	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.6e-06	433	456	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +f C+ G +C++ Hg+ Cla014264 433 KYCIYFNTAKGCRNGVNCQYKHGM 456 57********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.174	429	457	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MKRSRKSKSV SWAHDLNLCQ VKLFSSEDCP SKVGLKSCEH FQAKTSWMLP PHTFESNDCP 60 PGFNNTHLGN QLADISGIPL IKWNCPPKFV MSCHWRVTAG EESTEIESQN FREMTLLEAI 120 YPRASDIPPG ASVSTEIESE PYNDSLTPLV PISPIEEDES EVVELDSAAV ANFSTSSVQM 180 MASSYVQLEP AIVRSSIETS SVAAAAGEKP TEKLVDVGVD VVAAASAAFA VLMKSKEQGS 240 LIDTNLLIKI FSDPTMIQNL TNILPPCELI SESPPAAIAA PISVSKPLTE SISLPVPESN 300 RIPKLPNGNL LNMSNRVLSS EITLPQVSNI AASDVKPASA SGRSPAPDLQ KVKTKIPNGG 360 DCSKIGAVPS QANIAPVNMV KKGQTLKDVN YYKNLVRQHG DQKIGLNGNN HNHHNLNMMH 420 EMKAESLKPK NEKYCIYFNT AKGCRNGVNC QYKHGMSHNW RISNVLETRS TKRMKLWG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MKRSRKSKSV SWAHDLNLCQ VKLFSSEDCP SKVGLKSCEH FQAKTSWMLP PHTFESNDCP  60
PGFNNTHLGN QLADISGIPL IKWNCPPKFV MSCHWRVTAG EESTEIESQN FREMTLLEAI  120
YPRASDIPPG ASVSTEIESE PYNDSLTPLV PISPIEEDES EVVELDSAAV ANFSTSSVQM  180
MASSYVQLEP AIVRSSIETS SVAAAAGEKP TEKLVDVGVD VVAAASAAFA VLMKSKEQGS  240
LIDTNLLIKI FSDPTMIQNL TNILPPCELI SESPPAAIAA PISVSKPLTE SISLPVPESN  300
RIPKLPNGNL LNMSNRVLSS EITLPQVSNI AASDVKPASA SGRSPAPDLQ KVKTKIPNGG  360
DCSKIGAVPS QANIAPVNMV KKGQTLKDVN YYKNLVRQHG DQKIGLNGNN HNHHNLNMMH  420
EMKAESLKPK NEKYCIYFNT AKGCRNGVNC QYKHGMSHNW RISNVLETRS TKRMKLWG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149995.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6-like
TrEMBL	A0A0A0KMC2	0.0	A0A0A0KMC2_CUCSA; Uncharacterized protein
STRING	XP_004149995.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9