PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014215
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 335aa    MW: 37467 Da    PI: 8.7002
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014215genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.31.9e-33127182359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   +rY+eClkNhAas+Ggh++DGCgEfmp+ ge+gt++alkCaAC+CHRnFHR+e+++
    Cla014215 127 VIRYRECLKNHAASTGGHVLDGCGEFMPN-GEDGTPEALKCAACECHRNFHRKEMKD 182
                  689*************************8.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-21128180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.5E-31128180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-30129180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.997130179IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.6E-28264333IPR009057Homeodomain-like
SuperFamilySSF466893.19E-18267332IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-27271328IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
METRGEDEEI GTPNSPLCYN NPSSNRESST KLPNSDNPFL TTSADRRRDH TVPQLHFSHH  60
HKLNLHHIHK QHTRDHPEAT PDPPIQPSIS ASPPSAVTPP LPIASSRLIS RTPPFPGATD  120
NSIPSSVIRY RECLKNHAAS TGGHVLDGCG EFMPNGEDGT PEALKCAACE CHRNFHRKEM  180
KDDPPSQQAL PSGFFISNSI RNNGHRTDRT PVVPVSRHHQ LPAVPISSMM MAFGGGSNGA  240
PDESSSEDLN MYHPSNNGAR DLFGQQTQLT KKRFRTKFTQ GQKDKMVEFA EKLGWKIQKH  300
DELEVQQFCA EVGVRRQVFK VWMHNNKQAM KKKQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-262703271673ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143516.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_004143517.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658011.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658012.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658013.10.0PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9ZPW77e-64ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A0A0KH030.0A0A0A0KH03_CUCSA; Uncharacterized protein
STRINGXP_004162318.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.18e-66homeobox protein 24