PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 335aa MW: 37467 Da PI: 8.7002 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.3 | 1.9e-33 | 127 | 182 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eClkNhAas+Ggh++DGCgEfmp+ ge+gt++alkCaAC+CHRnFHR+e+++ Cla014215 127 VIRYRECLKNHAASTGGHVLDGCGEFMPN-GEDGTPEALKCAACECHRNFHRKEMKD 182 689*************************8.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-21 | 128 | 180 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.5E-31 | 128 | 180 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-30 | 129 | 180 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 130 | 179 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-28 | 264 | 333 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.19E-18 | 267 | 332 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-27 | 271 | 328 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
METRGEDEEI GTPNSPLCYN NPSSNRESST KLPNSDNPFL TTSADRRRDH TVPQLHFSHH 60 HKLNLHHIHK QHTRDHPEAT PDPPIQPSIS ASPPSAVTPP LPIASSRLIS RTPPFPGATD 120 NSIPSSVIRY RECLKNHAAS TGGHVLDGCG EFMPNGEDGT PEALKCAACE CHRNFHRKEM 180 KDDPPSQQAL PSGFFISNSI RNNGHRTDRT PVVPVSRHHQ LPAVPISSMM MAFGGGSNGA 240 PDESSSEDLN MYHPSNNGAR DLFGQQTQLT KKRFRTKFTQ GQKDKMVEFA EKLGWKIQKH 300 DELEVQQFCA EVGVRRQVFK VWMHNNKQAM KKKQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-26 | 270 | 327 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143516.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Refseq | XP_004143517.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Refseq | XP_011658011.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Refseq | XP_011658012.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Refseq | XP_011658013.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9ZPW7 | 7e-64 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A0A0KH03 | 0.0 | A0A0A0KH03_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162318.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 8e-66 | homeobox protein 24 |