PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014156
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 350aa    MW: 38299.6 Da    PI: 5.7259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014156genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20158207255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cla014156 158 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 207
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.42E-34157217No hitNo description
Gene3DG3DSA:3.30.730.102.3E-32158216IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23158216IPR016177DNA-binding domain
SMARTSM003806.6E-37158221IPR001471AP2/ERF domain
PROSITE profilePS5103223.143158215IPR001471AP2/ERF domain
PfamPF008473.5E-14159207IPR001471AP2/ERF domain
PRINTSPR003673.3E-11159170IPR001471AP2/ERF domain
PRINTSPR003673.3E-11181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAAIDIYSG ISTPVYSSDP FSEELMKALQ PFMKSATSTS SSSSPSLSLP SPSVSSQSRL  60
SPDFCSPSST RLFSQGFSGI EQMGFEQSGP IGLNNLTPSQ ILQIQAQIQL PSPTMSSFSS  120
SSSSSSSSSS FQSQYRNFLA PKSFTMKHIG SPPKSTKLYR GVRQRHWGKW VAEIRLPKNR  180
TRLWLGTFDT AEEAALAYDK AAYKLRGDFA RLNFPHLKHQ FGDFKPLHPS VDAKLKAICQ  240
GLKQGKTEQL CSVEDEKPTT NPLPFESNSV ANNFWEPELK SEVETSSSSS SSSPSRSEDY  300
STGSSPESSI SFLDFSDSQW GEGVEAFCLE KYPSVEIDWA ALSQLAESEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22157215160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440612.11e-178PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A1S3B2971e-177A0A1S3B297_CUCME; ethylene-responsive transcription factor ERF060
STRINGXP_008440612.11e-178(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-52ERF family protein