PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 41625.9 Da PI: 5.9057 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.8 | 2.4e-07 | 153 | 174 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Cla014139 153 FCEICGKGFKRDANLRMHMRAH 174 6*******************99 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00058 | 240 | 263 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ C+ ksFs +Lk+H++ + Cla014139 240 FSCNRCNkKSFSVMADLKSHLKHC 263 89*******************977 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.0011 | 272 | 287 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ Cla014139 272 CGTTFSRKDKLFGHMA 287 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.48E-6 | 149 | 175 | No hit | No description |
PROSITE profile | PS50157 | 11.967 | 152 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 152 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0015 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.002 | 153 | 172 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 202 | 235 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 18 | 240 | 262 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 210 | 268 | 292 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MNPPTFPMEF SGDPLPTTII GSGDPRIPLQ NLSTIRSRMD DVQIFLSDNI DREVRITNQQ 60 MDAVSSEIAT AIQQIIINGA ALLAYAEAKT PTAPDLTAST TRTQPNPVTQ KSMVELKVEG 120 VDEITRTESE EFDSDWEIAE LDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT 180 PEALAKPLDV VGADHRAKRT RFSCPYDGCV RNKMHKKFRA LKSLICVKNH FKRSHCPKMF 240 SCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVPDDA 300 SASAATSEMD EDGDSNQISK DVNFPNASNG SSDDGSFESF LDGFGSIENH CLQEVLGFPY 360 DFDSESEWKF CGF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440589.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
TrEMBL | A0A1S3B230 | 0.0 | A0A1S3B230_CUCME; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | XP_008440589.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 2e-77 | C2H2 family protein |