PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014094
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 313aa    MW: 33821.4 Da    PI: 8.2594
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014094genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-392585262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +++alkcprCds ntkfCyynnysl+qPryfCk+CrryWtkGGalrnvPvGgg+rknkk++
  Cla014094 25 NQQALKCPRCDSPNTKFCYYNNYSLTQPRYFCKTCRRYWTKGGALRNVPVGGGCRKNKKVK 85
               5799******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-242679IPR003851Zinc finger, Dof-type
PfamPF027013.1E-332783IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3572983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLPEKLAPGG CRPKNSQAKP TSDHNQQALK CPRCDSPNTK FCYYNNYSLT QPRYFCKTCR  60
RYWTKGGALR NVPVGGGCRK NKKVKSSSLS LPSSKDDSGS SNPEIGRLGF FVNGFSSGQL  120
GGNRNSSFST APTTGLYDQF GVFSLDQSRS LNSFIPSTGF VNSLNVDTSL ASSIESLSSM  180
NQDLHWKLQQ QRLAMLFGTG HNNTAIDKNR GALEDHGHEL KPCSFQNLEI SKPEACNSSD  240
FSNARNETVA VTGAGVRAGG EPAAADEWFF GDSYTAPSMT MGAAAAGYNS GDSAARCDGV  300
QEWHDLHPYT HLP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143543.11e-177PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A0A0KJW61e-175A0A0A0KJW6_CUCSA; Uncharacterized protein
STRINGXP_004160153.11e-176(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-41Dof family protein