PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014090
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 27950.3 Da    PI: 9.7314
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014090genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.91.9e-261059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n+  rqvtfskRr+g++KKA+ELS+LCdaev +iifss+gk ye++s
  Cla014090 10 RIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS 59
               8***********************************************86 PP
2K-box68.42.3e-23841701298
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                ++ + +q+e++ L+++++nLq+++R+l+Ge+L  Ls+k+L++Le+qLe sl++iR kK  l++++  el +k +   +en++L++k+
  Cla014090  84 SDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGILMHQENIELSNKVNLYCQENMELHRKV 170
                56688*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.782161IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.99E-40277No hitNo description
SuperFamilySSF554552.49E-30277IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2085170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.27586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AEVGLIIFSS SGKHYEFAST  60
SIQSVIEKYN RRKEEDELLL NPISDVKLWQ KEVTTLRQQL HNLQENNRKL MGEQLYGLSI  120
KDLNNLESQL EFSLQSIRIK KGILMHQENI ELSNKVNLYC QENMELHRKV YGHDSRSEMN  180
LATGNALIPY GIITAAAAAA AAAPLPCAAL QMPFFPKGPP PAAAAAAAAV PIASDALRVP  240
IHLQLSPPEQ QA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-20183183MEF2 CHIMERA
6bz1_B2e-20183183MEF2 CHIMERA
6bz1_C2e-20183183MEF2 CHIMERA
6bz1_D2e-20183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818752e-77LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132622e-77LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440514.11e-132PREDICTED: MADS-box transcription factor 23 isoform X3
RefseqXP_022977969.11e-132MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP492e-76MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3B0V71e-131A0A1S3B0V7_CUCME; MADS-box transcription factor 23 isoform X3
STRINGXP_004143541.11e-137(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-77AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]