PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014050
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 571aa    MW: 62018 Da    PI: 8.0312
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014050genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24223267145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cla014050 223 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 267
                79****************************************985 PP
2QLQ576e-20154190137
        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                ++FT +Q+ +L++Q+l+yKyL++n+PvP++Ll +++k
  Cla014050 154 GPFTQSQWIELEHQALIYKYLSSNVPVPSNLLIPLKK 190
                59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.559155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-14155188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287223267IPR014977WRC domain
PfamPF088797.2E-21224266IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDFGVVGLDS FVDSSDAPSP HPASDPETKL KSLGSAFSKQ DRSGFVDDDW RNSKIPKTET  60
VSASKTMPLH QGFPLLRSNT LLSSDGRQKE HMLSFSSIKS GTSLQTKDSD LIPRNTQNSI  120
FPYNQQKSSL YSRNTGCVSG SYSSMHGPVA GIRGPFTQSQ WIELEHQALI YKYLSSNVPV  180
PSNLLIPLKK SLYPYGLTCS SAGSLPPNTR WGSFHLGFSG NTDPEPGRCR RTDGKKWRCS  240
RDAVADQKYC ERHINRGRHR SRKPVEGQTG HSAPGTTNPT AMVATMSTSL SSTVMPSGGA  300
SNNLPIAQHQ LKSLHPVAAS DPGADAPVNR LLNKETVCSR IQESGGLSMM SSTVNLMSSN  360
DKSGAKQEIS LGESTQSEFG LVSTDSLLNP SQRGSYPNPK NYDSFLIFND QETQDQDQHP  420
LRQFFEDWPK DQSSRSVMSW PEEFKSDWTQ LSMSIPMSDF SSSSSSPTHD KLAQSPLRLS  480
RELEPIQMNL GVSRNDGELV QKQSNQITMS WGSSMGGPLG EALTNASSCV KASKVPPSLN  540
LLAEGWDGGQ LGSSPTGVLQ KATFCSLSNS S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143409.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A0A0KG060.0A0A0A0KG06_CUCSA; Uncharacterized protein
STRINGXP_004143409.10.0(Cucumis sativus)
STRINGXP_004160932.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-109growth-regulating factor 1