PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013963
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 173aa    MW: 19195.2 Da    PI: 7.8045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013963genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-161967355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  Cla013963 19 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 67
               9*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-371881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-291876IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-201876IPR016177DNA-binding domain
PROSITE profilePS5103221.8121875IPR001471AP2/ERF domain
PfamPF008471.4E-101967IPR001471AP2/ERF domain
PRINTSPR003672.6E-111930IPR001471AP2/ERF domain
CDDcd000181.99E-241977No hitNo description
PRINTSPR003672.6E-115777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDGGGEATRK RGLDNQRLYK GIRMRKWGKW VAEIREPNKR SRIWLGSYSS PVAAARAYDT  60
AVFYLRGPSA RLNFPELLAG EGRGISAGAG DMSAATIRKK ATEVGARVDA LESSLGQHSH  120
HNRNHHSHAS ASPPETKGCS GFLDRVDLNK LPDPEEEDEE GDGEFEWERV ERH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-141975663ATERF1
3gcc_A9e-141975663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141907.11e-100PREDICTED: ethylene-responsive transcription factor ERF011
SwissprotQ9FH941e-58ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0A0KIC85e-99A0A0A0KIC8_CUCSA; Uncharacterized protein
STRINGXP_004141907.11e-100(Cucumis sativus)
STRINGXP_004169980.11e-100(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-54DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]