PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013851

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 255aa MW: 28765.7 Da PI: 5.0018

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013851	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.8e-38	36	94	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++ Cla013851 36 TAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRAK 94 5679***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	26	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-32	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSDHHQQLSH PPPRLPPPPP PFASHLERKW KPHLETAPNC PRCASANTKF CYYNNYSLSQ 60 PRYFCKSCRR YWTKGGSLRN VPVGGGCRKS RRAKSSRSSA VSRPTKPDVS TQITDSSSNG 120 SDIDLAAVFA RFLNSPPCSE PQALTSSPES VDPLENSEIF FEGLSDLLFD EENQGQEEKQ 180 GIPGNYENLP YGLETELGID EELWPSHQMQ EQLEELDSFS CNYNANHFRV SDQFCQVGDN 240 WSSFDFAAVN NVEYF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022939534.1	1e-128	dof zinc finger protein DOF1.2-like
TrEMBL	A0A0A0KGG2	1e-124	A0A0A0KGG2_CUCSA; Uncharacterized protein
STRING	XP_008441540.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	3e-40	Dof family protein