PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013666

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 300aa MW: 33438.6 Da PI: 8.7435

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013666	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.2	1.1e-15	246	289	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ Cla013666 246 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKR 289 79****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	236	289	No hit	No description
SMART	SM00338	2.4E-13	242	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.691	244	289	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.40E-22	246	288	No hit	No description
Pfam	PF00170	2.8E-13	246	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	246	289	No hit	No description
PROSITE pattern	PS00036	0	249	264	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGSQAGGDPN GKQSQFQPLV RQNSLYSLTL DEVQNQLGDL GKPLISMNLD ELLKNVWTAE 60 ANQTVGKDNE DNNVLANQTS LQRQASLSLN GALSKKTVDE VWRDIQQSKD SEEKKSRERQ 120 PTLGEMTLED FLVKAGVVAE TSSNKKGAGP VVEIDANITP QFQQTQWMPY PQPQYQSQQA 180 AMMGVYMSGQ PIPQPLHVGG GAVMDVPYVD NQLALPTPLM GALSDTQTSG RKRGAPEDMI 240 EKTVERRQKR MIKNRESAAR SRARKQAYTN ELENKVSRLE EENERLRKRK LNGLTFVTSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	290	LRKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	0.0	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456645.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	2e-80	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A1S3C4E9	0.0	A0A1S3C4E9_CUCME; ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
STRING	XP_004140925.1	0.0	(Cucumis sativus)
STRING	XP_004171515.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	7e-71	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]