PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013643

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 538aa MW: 60808.2 Da PI: 4.4916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013643	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2.1e-49	17	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppGfrFhPtdeelv +yLk k+ ++kl+l ++i+e+d+yk+eP++Lp + k+k+++++w+fFs+r+++y++ +r +rat+ gyWkatg+d+ + + ++++ Cla013643 17 PPGFRFHPTDEELVLYYLKFKICKRKLKL-DIIRETDVYKWEPEELPgQsKLKTGDRQWFFFSPREHRYPNASRLSRATRYGYWKATGRDRIIQC-NSRN 114 8**************************.99**********963589999***********************************99.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grap+ge+tdWvmhey+l Cla013643 115 VGVKKTLVFYQGRAPNGERTDWVMHEYTL 143 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-56	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	52.833	16	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900057	Biological Process	positive regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MSTVSSSMGL CDEGDWPPGF RFHPTDEELV LYYLKFKICK RKLKLDIIRE TDVYKWEPEE 60 LPGQSKLKTG DRQWFFFSPR EHRYPNASRL SRATRYGYWK ATGRDRIIQC NSRNVGVKKT 120 LVFYQGRAPN GERTDWVMHE YTLDEDELKR CKNVKDYYAL YKLFKKSGPG PKNGEQYGAP 180 FREEDWVDDA DGQEPQVKKL DEVDSVVRER ENGQIQLTSD DIEELMKQIV DDPVLESPSA 240 SGYHQFDSGV QVDDKEETVS TMIDAYSRDH ILPEPDKVYH SSGQPCDLHA TFDFTQSGFS 300 QLQSFEGEVS SAPKYCEEEE DFLEINDLIG PEPTPVANVN PLGNLPPSEL DGLSDLDLFH 360 DANMFLRDLG PIVPETVLDP YLNALDIDVA NNLNGNLPYD PYQQNQMDNG FWKNNETENA 420 FSFPESHGQF VTQSTLGGGY ESVSSSAAGT RENQSANDGG GSASWFSSNL WAFVESIPTT 480 PASASENVNR AFVRMSSFSR LRLNTLNTLN TNVAVRNLET GARRRTGNIR LWGNCIAS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MSTVSSSMGL CDEGDWPPGF RFHPTDEELV LYYLKFKICK RKLKLDIIRE TDVYKWEPEE  60
LPGQSKLKTG DRQWFFFSPR EHRYPNASRL SRATRYGYWK ATGRDRIIQC NSRNVGVKKT  120
LVFYQGRAPN GERTDWVMHE YTLDEDELKR CKNVKDYYAL YKLFKKSGPG PKNGEQYGAP  180
FREEDWVDDA DGQEPQVKKL DEVDSVVRER ENGQIQLTSD DIEELMKQIV DDPVLESPSA  240
SGYHQFDSGV QVDDKEETVS TMIDAYSRDH ILPEPDKVYH SSGQPCDLHA TFDFTQSGFS  300
QLQSFEGEVS SAPKYCEEEE DFLEINDLIG PEPTPVANVN PLGNLPPSEL DGLSDLDLFH  360
DANMFLRDLG PIVPETVLDP YLNALDIDVA NNLNGNLPYD PYQQNQMDNG FWKNNETENA  420
FSFPESHGQF VTQSTLGGGY ESVSSSAAGT RENQSANDGG GSASWFSSNL WAFVESIPTT  480
PASASENVNR AFVRMSSFSR LRLNTLNTLN TNVAVRNLET GARRRTGNIR LWGNCIAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-42	17	172	18	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-42	17	172	18	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-42	17	172	18	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-42	17	172	18	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-42	17	172	21	174	NAC domain-containing protein 19
3swm_B	7e-42	17	172	21	174	NAC domain-containing protein 19
3swm_C	7e-42	17	172	21	174	NAC domain-containing protein 19
3swm_D	7e-42	17	172	21	174	NAC domain-containing protein 19
3swp_A	7e-42	17	172	21	174	NAC domain-containing protein 19
3swp_B	7e-42	17	172	21	174	NAC domain-containing protein 19
3swp_C	7e-42	17	172	21	174	NAC domain-containing protein 19
3swp_D	7e-42	17	172	21	174	NAC domain-containing protein 19
3ulx_A	9e-42	13	143	12	140	Stress-induced transcription factor NAC1
4dul_A	6e-42	17	172	18	171	NAC domain-containing protein 19
4dul_B	6e-42	17	172	18	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00178	DAP	Transfer from AT1G34180	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	0.0	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456695.1	0.0	PREDICTED: NAC domain-containing protein 17-like
TrEMBL	A0A1S3C3X9	0.0	A0A1S3C3X9_CUCME; NAC domain-containing protein 17-like
STRING	XP_008456695.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6131	34	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34180.1	1e-126	NAC domain containing protein 16