PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013523

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 319aa MW: 34941.8 Da PI: 8.0631

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013523	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.7	2.5e-35	50	151	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l +++ ++++c ss+ a+++s+g Cla013523 50 TARKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSDLPPCNPNAC----SSVPAQTESIGidvvtdrcesskn 145 789*************************************************************43333445....222223233333344433322222 PP TCP 89 .....k 89 + Cla013523 146 hdflfQ 151 233330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-32	50	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.878	52	110	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDSNATETLN KSFLNPPLEE HATRRTRMGF NTIGGEILQV PGGGLVVRST ARKDRHSKVY 60 TAKGLRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKSAIDKL SDLPPCNPNA 120 CSSVPAQTES IGIDVVTDRC ESSKNHDFLF QSQFSENLIP PPSPVESAVG FQSCQNLGLS 180 LQTQNSPQNV HHHHQTVFYT ASSGNSGPGF DDGFEKIVAW NSNVFGSIPI FNQSSAVFPQ 240 RGPLQSSLET PVPHYTWNDL SVVSAEKRHP NPIHEHSSAS IPRFISDGMP HLDVHGRFQS 300 DGDGGGGKAS PPSSSYSRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-23	57	110	1	54	Putative transcription factor PCF6
5zkt_B	1e-23	57	110	1	54	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149285.1	1e-169	PREDICTED: uncharacterized protein LOC101204399
TrEMBL	A0A0A0KF06	1e-175	A0A0A0KF06_CUCSA; Uncharacterized protein
STRING	XP_004149285.1	1e-169	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-40	TCP family protein