PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013513
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 457aa    MW: 49908.7 Da    PI: 6.7408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013513genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16e-134772126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C +++rtG C+yG++C+F+H+
  Cla013513 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
               5789*********************9 PP
2zf-CCCH361.2e-1191115327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tGtCkyG++Ck++H++
  Cla013513  91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
                789********************96 PP
3zf-CCCH37.15.2e-12138160527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C++++rtG Ck+G +CkF+H++
  Cla013513 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
                6********************97 PP
4zf-CCCH39.78.1e-13278303227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++Cr+f+ +GtCkyG+ CkF+H++
  Cla013513 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303
                689*********************96 PP
5zf-CCCH361.2e-11342366226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+++  +G+CkyG++CkF H+
  Cla013513 342 GQAICSYYNMYGICKYGPSCKFDHP 366
                6899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-64673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3054674IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-104872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-65173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-55271IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.91588116IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-494115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5138159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558276304IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6276303IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5282302IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704340368IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-9342366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5342368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPDNLQVQRN AVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLPQ ARPGALGSGG  180
TPFMPSSGVP YTGGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPSQGAIA AQDWNTYVGN  240
VSPILPNLGY NSVNLEESYS NGQLALSTST PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNALGLPSRP LNLYSSSSHN VVDFLLGCFI QGQAICSYYN MYGICKYGPS  360
CKFDHPSATY PYNYGFTLPV LDSSFIKYPS NNFTMSSHET LPQTLSKSSE WVQKADPSNN  420
KCRTTDSKVV VESTAEEATS VSCSLPGGSE TLQDQSG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819211e-147LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132651e-147LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022985967.10.0zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S3C3U60.0A0A1S3C3U6_CUCME; zinc finger CCCH domain-containing protein 3-like
STRINGXP_008456401.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-103C3H family protein