PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013502
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 302aa    MW: 35177 Da    PI: 8.1013
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013502genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ +++++sws++g sfvv+++ efa+++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF+++ F +g+++ll++i+
     Cla013502  15 FLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQ---------WEFANEGFVRGRTHLLKSIH 102
                   9***************************************************************9988.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Cla013502 103 RRK 105
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-6011104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGSDGTSGG APPPFLTKTY EMVDDPMTNS IVSWSQSGFS FVVWNPPEFA QELLPIYFKH  60
NNFSSFVRQL NTYGFRKIDR EQWEFANEGF VRGRTHLLKS IHRRKPIYSH SQSNSHGNGA  120
PLSEQERQEL EQKIKTLHQE KTILQSQLQK HENEKEQIGL QIQTICQQLW RMGNQQKQLI  180
GILGAELQKH QQSKKRKMWK VNELLVEEWT EFERDEKNNM KKKVKVPPLE LMGKLELSLG  240
LCEDLLCNVA QVLREGKEME VKKEGEMRSG VNDVFWEQFL TEIPGSSKVS EVYLDRRNNV  300
VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25110412129Heat shock factor protein 1
5d5v_B2e-25110412129Heat shock factor protein 1
5d5v_D2e-25110412129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187196QKHQQSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456389.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotQ94J161e-60HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1S3C3730.0A0A1S3C373_CUCME; heat stress transcription factor A-4c-like
STRINGXP_008456389.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2467433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-59heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]