PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013485
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 296aa    MW: 33037.2 Da    PI: 5.5375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013485genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.26e-17180226259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fp           +vkk+vers+edp +v++tYeg+Hnh 
  Cla013485 180 EDGYRWRKYGQKAVKNSPFP-----------SVKKRVERSSEDPCFVITTYEGKHNHY 226
                8*******************...........69************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-18166226IPR003657WRKY domain
SuperFamilySSF1182906.93E-17172228IPR003657WRKY domain
PROSITE profilePS5081119.738174228IPR003657WRKY domain
SMARTSM007742.7E-21179227IPR003657WRKY domain
PfamPF031064.3E-11180225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSNEDHHEKE EDPYYSHFDP FTHNFHHHKP FEAPPLTSPY YEAFDIVPSS VGLYSDFLHA  60
SAEYGYNNNN GLLPPAHEMS CSSSDVISPI DDASKKSLGL GDQLVVTGEH PSTPNCSSTT  120
CSSDEAAAGG EDSSKIGEVK GFDDKNGENS KKVNRGKKKE KREKGPRFAF LTKTEIDNLE  180
DGYRWRKYGQ KAVKNSPFPS VKKRVERSSE DPCFVITTYE GKHNHYCPIT LRGHNPAGVL  240
PPSVSPPYLS GLAPANFFSG EFYENLQQQY YEVPDEYGLL QDLINPSFNS KQDPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-171722281077Probable WRKY transcription factor 4
2lex_A4e-171722281077Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656990.11e-130PREDICTED: probable WRKY transcription factor 12
TrEMBLA0A0A0KBC51e-128A0A0A0KBC5_CUCSA; Uncharacterized protein
STRINGXP_008456349.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2467333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-30WRKY DNA-binding protein 71