PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013447
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 97aa    MW: 10936.9 Da    PI: 10.6203
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013447genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.7e-323385153
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
               kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ +
  Cla013447 33 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQVF 85
               79*************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0093090IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-303086IPR009057Homeodomain-like
SuperFamilySSF466893.94E-163288IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-233386IPR006447Myb domain, plants
PfamPF002492.4E-83584IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MFHATKKPSS MTSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT  60
PKTIMRVMGV KGLTLYHLKS HLQVFLITVA HQLKLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-193385153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193385153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193385153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193385153Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-193385254Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819211e-76LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132651e-76LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140019.15e-54PREDICTED: myb family transcription factor APL
SwissprotQ9SAK52e-46APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1S3C2G38e-52A0A1S3C2G3_CUCME; myb family transcription factor APL-like
STRINGXP_004140019.12e-53(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15413911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.26e-49G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]