PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | G2-like | ||||||||
Protein Properties | Length: 97aa MW: 10936.9 Da PI: 10.6203 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.7e-32 | 33 | 85 | 1 | 53 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ + Cla013447 33 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQVF 85 79*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.009 | 30 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 30 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-16 | 32 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-23 | 33 | 86 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 35 | 84 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MFHATKKPSS MTSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT 60 PKTIMRVMGV KGLTLYHLKS HLQVFLITVA HQLKLFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-19 | 33 | 85 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 33 | 85 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 33 | 85 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 33 | 85 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 33 | 85 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 1e-76 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 1e-76 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140019.1 | 5e-54 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | Q9SAK5 | 2e-46 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A1S3C2G3 | 8e-52 | A0A1S3C2G3_CUCME; myb family transcription factor APL-like | ||||
STRING | XP_004140019.1 | 2e-53 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15413 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 6e-49 | G2-like family protein |
Publications ? help Back to Top | |||
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