PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla013445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 41131.9 Da PI: 4.8943 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.3 | 1e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yL +k++g+++el e+i+e+d+yk+ePw+Lp k + +++ ewyf+s+rd+ky++g+r+nratk gyWkatgkd+ v s +++ Cla013445 6 LPPGFRFHPTDEELVAYYLDRKINGRSIEL-EIIPEIDLYKCEPWELPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATKGGYWKATGKDRVVQS-QKR 103 79****************************.99**************96435566888**********************************9999.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv+ykgrap+g++t+Wvmheyrl Cla013445 104 AVGMKKTLVYYKGRAPHGVRTNWVMHEYRL 133 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-64 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.881 | 6 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MAPMTLPPGF RFHPTDEELV AYYLDRKING RSIELEIIPE IDLYKCEPWE LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATKGGYWK ATGKDRVVQS QKRAVGMKKT LVYYKGRAPH 120 GVRTNWVMHE YRLLHSQLAT GTTSSPSSKD SYALCRVFKK ATIVPKSIGE KANGVDVEAP 180 VWQMADEQDM QVDDGGAPES SRGGIESNED GDSFDHFLYE YNPKIFSSEN SSSDLTQGNV 240 ADDLPAPVAS DNEANSSANN LYPIHIDCPS NFMQIQSNFI DHENLHYQHP YYPPLELEDF 300 PQLNIIGETK SSMKPECIDE YMKFDKFRDS MNGSLEEILS LCSLPNMQED NHNLQHSTLL 360 Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-59 | 1 | 166 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-59 | 1 | 166 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-59 | 1 | 166 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-59 | 1 | 166 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-59 | 1 | 166 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-59 | 1 | 166 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-59 | 1 | 166 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 1e-127 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 1e-127 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456283.1 | 0.0 | PREDICTED: NAC domain-containing protein 76 | ||||
TrEMBL | A0A1S3C450 | 0.0 | A0A1S3C450_CUCME; NAC domain-containing protein 76 | ||||
STRING | XP_008456283.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-102 | NAC domain containing protein 20 |