PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28787.4 Da PI: 9.3269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp +r kr++lg+f+taeeAa+ +++a+ kl g Cla013424 105 KKFRGVRQRP-WGRWAAEIRDP----IRrKRIWLGTFDTAEEAAAVYDRAAVKLQG 155 59********.**********7....246**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.2E-53 | 3 | 253 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SMART | SM00380 | 9.5E-34 | 106 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 106 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 106 | 163 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-30 | 106 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-13 | 106 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.27E-29 | 109 | 162 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAMEDMASLS EHKINYRRKP LTSGDSTKFK QKLVRIIVTD ADATDSSSED ELILRSRTAI 60 RREVREITIK RYSALDGSSA KSSVSEICKK RNPRSRRSRK SSRRKKFRGV RQRPWGRWAA 120 EIRDPIRRKR IWLGTFDTAE EAAAVYDRAA VKLQGPNATT NFSGDGSVTT VADGGSKQED 180 GLESRKTTAA WSPASVLHYD SVLTPIEEML YCGEIDEFGF AMAPSSLPAA RRQCGGEEDF 240 GEMELDLDYF LVDVIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-19 | 105 | 162 | 4 | 62 | ATERF1 |
3gcc_A | 9e-19 | 105 | 162 | 4 | 62 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 105 | KKRNPRSRRSRKSSRRKK |
2 | 93 | 105 | RSRRSRKSSRRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901953.1 | 1e-143 | PREDICTED: ethylene-responsive transcription factor ERF069-like | ||||
TrEMBL | A0A1S4E155 | 1e-142 | A0A1S4E155_CUCME; ethylene-responsive transcription factor ERF069-like | ||||
STRING | XP_008456258.1 | 1e-143 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-19 | cytokinin response factor 4 |