PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17928.2 Da PI: 4.8891 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.4e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+CakdC++apyfp+++p kfa+vhk+FGasnv+k+l+++p e+r da+ss+vyeA ar+rdPvyG+vg+i+ lq+++++l+ +l ++++e Cla013390 7 PCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPIEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAE 106 7********************************************************************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.2 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-41 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGAGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPFKFAIVH KIFGASNVSK MLQEVPIEQR 60 ADAVSSMVYE ASARMRDPVY GCVGTISFLQ NEVSRLEMQL GAAQAEILTL HMQQQATPTT 120 FPTTTTHTDQ DDQNLVIFSN ADSSNSFHIF QEEGDYYPLW T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 2 | 125 | 7 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 2 | 125 | 7 | 130 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143222.1 | 2e-95 | PREDICTED: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 2e-66 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0A0KBK5 | 4e-94 | A0A0A0KBK5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162401.1 | 7e-95 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-66 | LBD family protein |
Publications ? help Back to Top | |||
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