PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013322
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 295aa    MW: 33009.3 Da    PI: 6.0005
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013322genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28150203155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl Wtp+LH+rFv++v++L G + A Pk+i+++m+v+gLt+e+v+SHLQkYRl
  Cla013322 150 RPRLAWTPQLHKRFVDVVSHL-GLKDAAPKAIMQMMNVEGLTRENVASHLQKYRL 203
                59*******************.9999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-19147207IPR009057Homeodomain-like
PROSITE profilePS512949.29147206IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-29149207IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22151203IPR006447Myb domain, plants
PfamPF002495.5E-9152202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEQKKRESQF GGGNGCRNGD ERVLLWEEGL PDVEKLTPLS QSLISQELAS AFRILMEPHP  60
SLIDVNSASK MTIMNIRDEQ SEGYRSFEFT YDQTRREDVV MVESDEAINP DELGSDSRKL  120
RRVDSVEDTN LAPRAESLIE DAALARTLKR PRLAWTPQLH KRFVDVVSHL GLKDAAPKAI  180
MQMMNVEGLT RENVASHLQK YRLYLKRTQI SSTADEALVP IPVTQDSHDS SPSADTHGNG  240
YFPATYPMIY VPSPMMPMMF YGMGAHGHGL SQTGMRMVNL STVPTHSCSS KGQHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-31150206157Transcription factor LUX
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143206.10.0PREDICTED: transcription factor PCL1-like
TrEMBLA0A0A0KH890.0A0A0A0KH89_CUCSA; Uncharacterized protein
STRINGXP_004143206.10.0(Cucumis sativus)
STRINGXP_004160206.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.15e-51G2-like family protein