PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013317
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 711aa    MW: 80851.5 Da    PI: 5.3735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013317genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.23.4e-1073347081373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL+ cA+avss+d + a +lL++++++++  gd +qR+a++f++AL+ar+++++++     ++ ++s+ + ++ l+a+++    +P+ k+s +   +
  Cla013317 334 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIK 433
                6899**************************************************95444433345555665669************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +Il+ +e+++ +H+iDf+i +G+ Wp L+q La+ p+gpp+lRiTg+++p +g   +e++ e g+rL+k++e+++vpf+++++ ++++e++++e+L++++
  Cla013317 434 MILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGfrPAEKIVESGRRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDS 533
                **************************************************99999****************************999************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +++l+Vn+ ++  +llde+v+ +s+rd+vL+l+++++P+++v++  + ++ ++ F +rf eal ++sal+d+l+++lpr+s+er+++Ere+lgr+i+nvv
  Cla013317 534 NDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVV 633
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg +r+er et+++W+ r ++aGFk++pl+++++++ ++ l  ++ + + ++e++g++++gWk+r +++ ++W
  Cla013317 634 ACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCW 708
                ***********************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.399308689IPR005202Transcription factor GRAS
PfamPF035141.2E-104334708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MDHPNLNDFP VRGIDYQTPL TQFHDQTSLP TSYLYPEFEN SFVFNNPSPD LVPFVDPNGS  60
SAAELKLSEG VGSSGRSPGG DSSSDESDFR ESVLKYISQM LMEENLEEKP CMFYDPLGLE  120
VTEKSFYDAL VKNYPPSPNQ PPLLDCDSDL ASTTLSVPNT NSPDSQWVVD PGEHKSSVLP  180
NPVLSSHELV NELLAHNIFS DSTSILQYQK GLEEARKFLP VGTQLNIDLG SSMVPGVVSK  240
TENSPNGSKR RKSREREDVD LDSEEGRRNK HSTISVDEEE LSEMFDKVLL HDCGNETTAN  300
GGRENLQYNG QLHGSITSKA REKKQEKRKD SVDLRNLLIL CAQAVSSDDR RIAYELLKQI  360
RQHSTIIGDG FQRMAHFFAN ALEARMVGTG TGSRIYYESL AQSKISAADM LKAYQAHLSS  420
CPFKKLSLFF MIKMILKVAE NAKSLHVIDF GICYGFLWPM LIQFLAQLPD GPPNLRITGI  480
DHPLPGFRPA EKIVESGRRL EKYCERFNVP FQYQAIPSNN WETIRVEDLK LDSNDVLVVN  540
CFYRFNNLLD ETVEESSPRD AVLRLIRKMN PNIFVHSVVN GSYHAPFFIT RFREALFHFS  600
ALYDALDVNL PRDSDERMML EREFLGRQIM NVVACEGVQR VERPETYKQW QVRCMRAGFK  660
QLPLDKEIMN KFRSKLTSYY HKDFVLDEDE GWMLQGWKGR IVYASCCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-433237108380Protein SCARECROW
5b3h_A3e-433237107379Protein SCARECROW
5b3h_D3e-433237107379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464110.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3CM810.0A0A1S3CM81_CUCME; scarecrow-like protein 34
STRINGXP_008464110.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]