PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 339aa MW: 37509.7 Da PI: 9.9464 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 73 | 133 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg rknkk++ Cla013297 73 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKK 133 67899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-32 | 60 | 127 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.348 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAHSSLPIFL DPPNWHQPNQ PAAAATNDVH QDPRQLPAAF LQPPPPPTAG HGGGGIRPGS 60 MAYRARLAMI PQPEAALKCP RCDSTNTKFC YFNNYSLSQP RHFCKACRRY WTRGGALRNV 120 PVGGGFRKNK KKKKSNPSKS PTASQSQMGN SRSIMSRSCN NMESSSTMRD FPSHSSLPSL 180 NILPSLQQHF SRNFGNNFPG IHINNSAVAR EYDVEWQQQQ QPFIVAGLES PTTATTTAAA 240 YTQAEVNNNG NNNNFVANSL QQAAGLVQYN NNCHQQLQNL TPFSRIPMKN EEQNQEQGIL 300 LSNFLRPNDH NSQFWGSNHQ NSWTDHLSAL SSSSSSHLL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681918 | 1e-124 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
GenBank | LN713265 | 1e-124 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448399.1 | 1e-167 | PREDICTED: dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A1S3BJL9 | 1e-166 | A0A1S3BJL9_CUCME; dof zinc finger protein DOF3.6 | ||||
STRING | XP_008448399.1 | 1e-167 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24667 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 2e-39 | OBF-binding protein 3 |