PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013280
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 264aa    MW: 30249.6 Da    PI: 6.5246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013280genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l++ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
        Cla013280  9 KGPWTEQEDIQLICFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding53.46.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
        Cla013280  62 RGKMTVQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.755456IPR017930Myb domain
SuperFamilySSF466892.12E-296103IPR009057Homeodomain-like
SMARTSM007171.8E-15858IPR001005SANT/Myb domain
PfamPF002498.0E-16956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-191063IPR009057Homeodomain-like
CDDcd001671.71E-101156No hitNo description
PROSITE profilePS5129427.23157111IPR017930Myb domain
SMARTSM007178.4E-1761109IPR001005SANT/Myb domain
PfamPF002492.6E-1562106IPR001005SANT/Myb domain
CDDcd001672.16E-1164107No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2364110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVEGQEIRKG PWTEQEDIQL ICFVGLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTVQEE RLVLELHAKW GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKRRTLSS  120
SSSSSSSSSS SSSSSFNNAA KEFPADTGPV KFFDSGGSEI SASSSTKKKI EENQELGDQN  180
GYSMDDIWKD IEVSNHESLI MNQDVYSEED CNNNFSCPAL NSTSSWEDYY CGDSLWRMEE  240
EESKLIFSGW PGLGLTQPNQ NFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2861111105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8114400.0LN811440.1 Lilium hybrid division I mRNA for MYB48, cultivar Prato.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448372.11e-168PREDICTED: transcription factor MYB48-like isoform X1
SwissprotQ9LX828e-86MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3BIY11e-167A0A1S3BIY1_CUCME; transcription factor MYB48-like isoform X1
STRINGXP_008448372.11e-168(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-80myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]