PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WOX | ||||||||
Protein Properties | Length: 185aa MW: 21350.8 Da PI: 6.8623 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.3e-20 | 11 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Lee +++ ++p+a+++++++++l +++ ++V++WFqN++a++++ Cla013275 11 SRWCPTPEQVMILEEIYRNgLKTPNATQIQHITSHLslygKIEGKNVFYWFQNHKARDRQ 70 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117 | 8.8e-38 | 10 | 71 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+PtpeQ++iLee+y++Gl+tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk Cla013275 10 PSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQK 71 58***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.7E-6 | 8 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.98E-11 | 11 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-17 | 11 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-4 | 12 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-8 | 12 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.604 | 16 | 71 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSPAAGITTP SRWCPTPEQV MILEEIYRNG LKTPNATQIQ HITSHLSLYG KIEGKNVFYW 60 FQNHKARDRQ KLRRKLYKQL QQHHFLMKRH RFDEHNQFFQ YFLPQHHQLV PQLLPLPSPS 120 SHQREGEEEA ATEVEGGGDE GRTVAEEDGE TTCRTGTLRT LELFPVRASW VEEEEGTSGN 180 GGWGN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 1e-99 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 1e-99 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463857.1 | 3e-98 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A1S3CK69 | 8e-97 | A0A1S3CK69_CUCME; WUSCHEL-related homeobox 3 | ||||
STRING | XP_008463857.1 | 1e-97 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 4e-39 | WOX family protein |