PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013052
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 427aa    MW: 47866.1 Da    PI: 8.7383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013052genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30167226159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Cla013052 167 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 226
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32152228IPR003657WRKY domain
SuperFamilySSF1182907.72E-28160228IPR003657WRKY domain
PROSITE profilePS5081129.161162228IPR003657WRKY domain
SMARTSM007743.2E-37167227IPR003657WRKY domain
PfamPF031063.1E-27168226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDRMKEENKV LRKAVEQTMK DYYDLEMKIG IIQQNNNLNN KDSHNFLSFH ENENKRHEEP  60
TKQDLELGEM AKKKRRVRSP SKEDEMRESE LGLSLGLHTK NNDLDQEDNH RELLQEERRE  120
KKKEDSIMSN FYSIQNKPQR PELQAMAPPQ NRKARVSVRA RCESATMNDG CQWRKYGQKI  180
AKGNPCPRAY YRCTVAPGCP VRKQVQRCLE DMSILITTYE GTHNHPLPVG ATAMASTASA  240
AASFMLLDST NTTNNLSSLP NPQNPNFLNP QNPNILNSSS YSPTNFLQTQ NPNQPSTNTF  300
YTPLIPTSST SNFPQPSNWI NTNPTSFYHT NFPLHGRSLR PPDDNKPPFT PESVSAIASD  360
PKFRVAVAAA ISSLINKENN NTTTSNSPIE DSSSFGPSKD GKGSSGGGDS DGRNKKWVVE  420
SLSSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21154230176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175KKKRR
27176KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840190.0GU984019.1 Cucumis sativus WRKY protein (WRKY19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650228.10.0PREDICTED: uncharacterized protein LOC101215114 isoform X1
SwissprotQ9C9F08e-76WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A0A0LC021e-180A0A0A0LC02_CUCSA; Uncharacterized protein
STRINGXP_008456102.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-66WRKY DNA-binding protein 9