PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013009
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 306aa    MW: 34638 Da    PI: 6.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013009genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
        Cla013009 14 KGPWTPEEDRKLVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.65.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+++++++++ lG++ W+ Ia++++ gRt++++k++w+++l
        Cla013009  67 RGNFSEQEEQIIINLHASLGNK-WSIIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.906961IPR017930Myb domain
SuperFamilySSF466892.55E-3211108IPR009057Homeodomain-like
SMARTSM007174.1E-161363IPR001005SANT/Myb domain
PfamPF002496.4E-181461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-251568IPR009057Homeodomain-like
CDDcd001679.81E-131661No hitNo description
PROSITE profilePS5129427.09462116IPR017930Myb domain
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
CDDcd001675.12E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2769116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSGSPMLEEN GVKKGPWTPE EDRKLVDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SEQEEQIIIN LHASLGNKWS IIASHLPGRT DNEIKNFWNT HLKKKLLQMG  120
IDPVTHMPIT DHHLNTLSNL QHLLSLPISP WDNPLRLHNE ATQLAKAHLL QNLLQLLTPH  180
SSLSISNNLF NTQQISDLTY NDLSIGSSFQ NIPINIEPPQ EPLPCENYTA ATHGVLGFEN  240
DSDRVKTFYN MNQSLNSLPN LVPASPECSN IPTAIDSNWE DLVDEEASNS YWKHVMNQTP  300
PPWTAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819141e-102LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050.
GenBankLN7132651e-102LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022943689.11e-168transcription factor MYB41-like
SwissprotQ9S9Z21e-77MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0A0LND61e-167A0A0A0LND6_CUCSA; Uncharacterized protein
STRINGXP_004148106.11e-168(Cucumis sativus)
STRINGXP_004169078.11e-168(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-80myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]