PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012926
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 264aa    MW: 28462.8 Da    PI: 5.4453
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012926genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16225259133
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ k
  Cla012926 225 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANK 259
                ********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.74686121IPR010399Tify domain
SMARTSM009795.3E-986121IPR010399Tify domain
PfamPF062009.7E-1190120IPR010399Tify domain
PROSITE profilePS5101713.354153195IPR010402CCT domain
PfamPF062032.0E-16153195IPR010402CCT domain
SMARTSM004014.1E-6219264IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-9222258No hitNo description
Gene3DG3DSA:3.30.50.102.6E-13223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.94E-13224259No hitNo description
PfamPF003203.5E-14225259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MPDSNFQDTM YGSGVMNNGG RDLDSIQNRV GDEDDDINGG EESIDNPQMR FEDSGGMSGS  60
VSVMNRVQDV VPSTYVSSSD YNPLTGNGGA DQLTLSFRGE VYAFDSVSPD KVQAVLLLLG  120
GYEIPSGIPA VGSVPINQQG TDGFPVRSVQ PQRAASLSRF REKRKERCFE KKIRYSVRKE  180
VALRMQRKKG QFISSKAIGD EVGSSSVLSQ TLDSGQDDGL LETSCTHCGT SSKSTPMMRR  240
GPAGPRTLCN ACGLKWANKV GLLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-137LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-137LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455162.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_008455163.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL72e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3BZV10.0A0A1S3BZV1_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_008455162.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-58ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]