PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012907

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 65aa MW: 7307.72 Da PI: 11.143

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012907	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.2	2.5e-24	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqv fskRr+g++KKA+EL +LCdae+ +++fs +gkl++y+s Cla012907 9 KKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59 689**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.978	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-25	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MTRKKIQIKK IDNIAARQVA FSKRRKGLFK KAKELAILCD AEIGLLVFSA SGKLFDYASS 60 RFSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_B	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_C	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_D	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_A	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_B	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_C	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_D	2e-18	1	60	1	60	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	1e-81	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	1e-81	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455140.1	1e-34	PREDICTED: MADS-box protein SVP-like isoform X1
Refseq	XP_008455141.1	7e-35	PREDICTED: MADS-box protein JOINTLESS-like isoform X2
Swissprot	Q9FUY6	5e-26	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A1S3BZT6	2e-33	A0A1S3BZT6_CUCME; MADS-box protein JOINTLESS-like isoform X2
TrEMBL	A0A1S3C1G2	2e-33	A0A1S3C1G2_CUCME; MADS-box protein SVP-like isoform X1
STRING	XP_008455140.1	4e-34	(Cucumis melo)
STRING	XP_004136891.1	3e-34	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	3e-28	AGAMOUS-like 24

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]