PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012669

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 771aa MW: 86037.3 Da PI: 6.8146

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012669	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	105	160	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k Cla012669 105 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIK 160 7999************************************************9877 PP
2	START	214.4	4.1e-67	279	506	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ea +el ++a++++p+Wv+s+ +++n+de+l++f +++ ++ea+r++++v+m++ +lv++++d + qW+e+++ ka+t++vi+ Cla012669 279 DEAVEELKTMATVGDPLWVRSVesgrQILNYDEYLKTFHFNNNnnsntrslkTHIEASRETALVFMDPSRLVQSFMDEN-QWKEMFPfmisKAATVDVIC 377 578999******************************8888899******************************.**************** PP TT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 +g ga+qlm+ae q+l+plvp R+ +f+R+++ql a++w+ivdvS+++ +++++ ++s+v+ +++pSg++i+++sngh+kvt+veh +++++ + Cla012669 378 NGeaanlnnGAVQLMFAEVQMLTPLVPtREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNiDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKV 477 ******************************************************99************************************ PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h+l+r +v++g+a+ga++w+atlq qce+ Cla012669 478 HNLYRNIVNNGTAFGARHWMATLQLQCER 506 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.55E-21	92	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-22	92	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.139	102	162	IPR001356	Homeobox domain
SMART	SM00389	6.7E-19	104	166	IPR001356	Homeobox domain
Pfam	PF00046	8.3E-19	105	160	IPR001356	Homeobox domain
CDD	cd00086	4.72E-19	105	160	No hit	No description
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	36.267	267	509	IPR002913	START domain
SuperFamily	SSF55961	7.97E-32	270	507	No hit	No description
CDD	cd08875	1.65E-100	271	505	No hit	No description
SMART	SM00234	1.4E-57	275	506	IPR002913	START domain
Pfam	PF01852	9.5E-55	279	506	IPR002913	START domain
SuperFamily	SSF55961	3.98E-12	529	703	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MGADMSNNNN TNRLAFTKDF FSSPALSLTL AGIFRRGEVA EKGDVEMEEV DDGSGGARRD 60 DTAAEVSSEN SGPVRSRSDD DGFDGGGAHD ENEDGMDHGC PVKRRKKYHR HTTEQIREME 120 ALFKESPHPD EKQRQQLSKR LGLSPRQVKF WFQNRRTQIK AIQERHENTL LKAEMEKLRE 180 EIKGMREICR KKVGCPNCGT ADAGEDHVAF TTTEQLRIKN AKLKAEVEKL RAALGKYPKA 240 AASPSYSSGN EQETRKRSCL DFYTGIFGVE KSRMMEKVDE AVEELKTMAT VGDPLWVRSV 300 ESGRQILNYD EYLKTFHFNN NNNSNTRSLK THIEASRETA LVFMDPSRLV QSFMDENQWK 360 EMFPFMISKA ATVDVICNGE AANLNNGAVQ LMFAEVQMLT PLVPTREMYF IRHCKQLDAE 420 QWAIVDVSIE NIEDNNNIDA SLVKYRKRPS GCIIKDESNG HCKVTMVEHL ECEKNKVHNL 480 YRNIVNNGTA FGARHWMATL QLQCERLAFF MATNIPMKDS IGVATLAGRK STLKLAQRMS 540 SSFSQAIAAS SYQTWTKVVG KTGEDIRVCS RKNLSDPGEP IGVILCAVSS LWLPLSPHLL 600 FDFFRDESRR NQWDAMFGGD KVKSIANLAK GQDRGNSVTI QTIGSKESNN MWILQDSSTN 660 SSESMVVYSG VDISSMQSVM SGCDSGSVAI LPSGFSILPD GADSRPPLLI TRRKDDKASD 720 NHGGVLLTAA VQILTDTSPS AKPTMESIEY VKSIICCTLK NIRTSMCCED D

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MGADMSNNNN TNRLAFTKDF FSSPALSLTL AGIFRRGEVA EKGDVEMEEV DDGSGGARRD  60
DTAAEVSSEN SGPVRSRSDD DGFDGGGAHD ENEDGMDHGC PVKRRKKYHR HTTEQIREME  120
ALFKESPHPD EKQRQQLSKR LGLSPRQVKF WFQNRRTQIK AIQERHENTL LKAEMEKLRE  180
EIKGMREICR KKVGCPNCGT ADAGEDHVAF TTTEQLRIKN AKLKAEVEKL RAALGKYPKA  240
AASPSYSSGN EQETRKRSCL DFYTGIFGVE KSRMMEKVDE AVEELKTMAT VGDPLWVRSV  300
ESGRQILNYD EYLKTFHFNN NNNSNTRSLK THIEASRETA LVFMDPSRLV QSFMDENQWK  360
EMFPFMISKA ATVDVICNGE AANLNNGAVQ LMFAEVQMLT PLVPTREMYF IRHCKQLDAE  420
QWAIVDVSIE NIEDNNNIDA SLVKYRKRPS GCIIKDESNG HCKVTMVEHL ECEKNKVHNL  480
YRNIVNNGTA FGARHWMATL QLQCERLAFF MATNIPMKDS IGVATLAGRK STLKLAQRMS  540
SSFSQAIAAS SYQTWTKVVG KTGEDIRVCS RKNLSDPGEP IGVILCAVSS LWLPLSPHLL  600
FDFFRDESRR NQWDAMFGGD KVKSIANLAK GQDRGNSVTI QTIGSKESNN MWILQDSSTN  660
SSESMVVYSG VDISSMQSVM SGCDSGSVAI LPSGFSILPD GADSRPPLLI TRRKDDKASD  720
NHGGVLLTAA VQILTDTSPS AKPTMESIEY VKSIICCTLK NIRTSMCCED D

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM095653	0.0	KM095653.1 Cucumis sativus multicellular trichome development class IV homeodomain-leucine zipper transcription factor (Gl-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023523626.1	0.0	homeobox-leucine zipper protein GLABRA 2 isoform X1
Refseq	XP_023523627.1	0.0	homeobox-leucine zipper protein GLABRA 2 isoform X1
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A097A1M3	0.0	A0A097A1M3_CUCSA; Multicellular trichome development class IV homeodomain-leucine zipper transcription factor
STRING	XP_004151038.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]