PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012656
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 188aa    MW: 21183.6 Da    PI: 4.5714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012656genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-191867255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr+++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a+++++g
  Cla012656 18 IYRGVRRRS-WGKWVSEIRQPRK---KSRIWLGTFTTAEMAARAHDVAALSIKG 67
               69****887.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-131767IPR001471AP2/ERF domain
CDDcd000183.52E-291777No hitNo description
PROSITE profilePS5103223.2221877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-311878IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-201878IPR016177DNA-binding domain
SMARTSM003803.3E-341883IPR001471AP2/ERF domain
PRINTSPR003674.1E-111930IPR001471AP2/ERF domain
PRINTSPR003674.1E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKRGKQTDRE QRDQKHPIYR GVRRRSWGKW VSEIRQPRKK SRIWLGTFTT AEMAARAHDV  60
AALSIKGDSA KAILNFPQLA GLLPRPVSLM PRDIQEAAAK AAAMVDFDST TASFSSFNDE  120
EGSEELGEIV ELPNIEEDIR AESWNEFEFI DSVDWWGNPP FAAGELDFCA VFSDQSTTPV  180
TFDGGDWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1816781273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447541.11e-119PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391273e-51TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD35e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3BHN51e-118A0A1S3BHN5_CUCME; ethylene-responsive transcription factor TINY
STRINGXP_008447541.11e-118(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]