PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012578
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 350aa    MW: 39051.2 Da    PI: 7.7262
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012578genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-2576119144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Cla012578  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
                79***************************************997 PP
2QLQ61.72e-211045136
        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               s+FTa+Q+q+L++Q+l++Ky+++++P+Pp+L++ ++
  Cla012578 10 SPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVK 45
               89******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3941146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-151144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94176120IPR014977WRC domain
PfamPF088793.2E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNSSPKTCTS PFTATQWQEL EHQALIFKYM VSGVPIPPDL IFSVKRSLDS SISARLFPHQ  60
PIGWGCFEMG FGRKADPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEI  120
SSTPPTQNPT PLILTSTRTL SSSTPTSSSY PLSTLSSSSS SSSSLTCETQ SYHQPPTAYH  180
ESSIHPFLYP QTSSRPPCSD FSSNNTNPQL FLYSGTHSQA DKEYRDNSGP REGVGMQAFF  240
PSVADSARSI AEVYSQPIGM DSYKGCSQFV SQSHQIYSSK QARQQQEQHC FVLGTDFNKS  300
SRSAKTEEEE DSETQKPLLH FFEDCPPKNS DSWLDLASNS SIQSGNFIGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818281e-170LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083.
GenBankLN7132581e-170LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023525289.10.0growth-regulating factor 5-like isoform X1
TrEMBLA0A0A0LCW40.0A0A0A0LCW4_CUCSA; Uncharacterized protein
STRINGXP_004148588.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-66growth-regulating factor 5