PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012507
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23589.5 Da    PI: 7.8248
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012507genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-24958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien   rqvtf+kRr+g+lKKA+ELSvLC+a++ v ifs +gklye +
  Cla012507  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELA 58
               79*********************************************965 PP
2K-box47.39.1e-178617512100
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLes..LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++ + + e+ +Lk+eie L+   R+ lG + ++  ++l eL   e+qLe  + ++R++K+++++e+ie l+++e  l+ +nk+L+ k++e
  Cla012507  86 HQTLEVKDEVIRLKQEIEVLKGL-RNALGGGGSEgiMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 175
                56677899*************97.998876544334***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-27176IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.875161IPR002100Transcription factor, MADS-box
CDDcd002653.90E-39276No hitNo description
PRINTSPR004041.9E-25323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-253859IPR002100Transcription factor, MADS-box
PfamPF014869.3E-1787173IPR002487Transcription factor, K-box
PROSITE profilePS5129710.03288179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCN AQIGVFIFSA HGKLYELATK  60
GTMQGLIERY MKHTNGNQPP DPPIDHQTLE VKDEVIRLKQ EIEVLKGLRN ALGGGGSEGI  120
MTLDELDMFE KQLEIWICQV RTTKMKFMCE EIEALRNQEL ILKAANKYLH DKMDENISNT  180
TNIEPVNITN CQYPLTIQDE LFQLCT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818896e-68LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132636e-68LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022925494.11e-139agamous-like MADS-box protein AGL12
RefseqXP_023536341.11e-139agamous-like MADS-box protein AGL12
SwissprotQ388414e-66AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A0A0KW771e-135A0A0A0KW77_CUCSA; Uncharacterized protein
STRINGXP_008459723.16e-98(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-68AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]