PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012461
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 157aa    MW: 17698 Da    PI: 6.9748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012461genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18453255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  Cla012461  4 NYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYHLPEMAAAAYDVAALHLRG 53
               69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-12353IPR001471AP2/ERF domain
CDDcd000181.45E-21363No hitNo description
PROSITE profilePS5103222.708461IPR001471AP2/ERF domain
SMARTSM003801.8E-35467IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21462IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-31462IPR001471AP2/ERF domain
PRINTSPR003674.5E-13516IPR001471AP2/ERF domain
PRINTSPR003674.5E-134363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEPNYRGVRK RKWGKWVSEI REPGKKTRIW LGSYHLPEMA AAAYDVAALH LRGPDARLNF  60
PELADSFPRP ASSSPDHIQA AAHMAALRLA NTKPPDPPAP VRVGLSPSQI QAINESPLDS  120
PTMWMQMAAE ALSLQPHDWD EEYNMHNHHS IWDYSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15566668ATERF1
3gcc_A2e-15566668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-136LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-136LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459595.14e-89PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ285e-51ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A1S3CAN71e-87A0A1S3CAN7_CUCME; ethylene-responsive transcription factor ERF022-like
STRINGXP_008459595.12e-88(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.12e-47ERF family protein