PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012379
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 156aa    MW: 17227.5 Da    PI: 9.9641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012379genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.3e-171967355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++GVr ++ +gr+v+eIr p   gk++r++lg+f ++e+Aa+a++ a+  l+g
  Cla012379 19 FRGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFASPEMAARAYDSAAAFLRG 67
               8****888.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.9161875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-291877IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-201877IPR016177DNA-binding domain
SMARTSM003802.5E-331881IPR001471AP2/ERF domain
PRINTSPR003672.2E-111930IPR001471AP2/ERF domain
PfamPF008473.1E-101967IPR001471AP2/ERF domain
CDDcd000181.66E-181977No hitNo description
PRINTSPR003672.2E-115777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTQAQSRRLR VNDSVSKTFR GVRKRSWGRY VSEIRLPGKK TRVWLGSFAS PEMAARAYDS  60
AAAFLRGTSA VLNFPDSVSS LPQPESCSRE HIQSAAAKAA AQMREMETEE RETSSGWSPT  120
TFEQVKEAPL LSPLRLGLLG FGPASDEDTL LLPAYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161680368ATERF1
3gcc_A2e-161680368ATERF1
5wx9_A1e-1519791576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022930134.16e-80ethylene-responsive transcription factor ERF022-like
RefseqXP_023536389.16e-80ethylene-responsive transcription factor ERF022-like
SwissprotQ391272e-29TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0A0KSQ81e-59A0A0A0KSQ8_CUCSA; Uncharacterized protein
STRINGXP_004156238.12e-61(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]