PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012377
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 358aa    MW: 40458.1 Da    PI: 8.147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012377genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.5e-53121411129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeel+++yLkkkv+ +k+++ ev++evd++k+ePwdL++k++     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 
  Cla012377  12 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVVREVDLNKIEPWDLQEKCRIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-SY 109
                69****************************.99**************964433122456*************************************9.89 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                +++g++ktLvfy+grap+g+ktdW+mheyrle
  Cla012377 110 KKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 141
                99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5911163IPR003441NAC domain
PROSITE profilePS5100558.1812163IPR003441NAC domain
PfamPF023655.8E-2813140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGSSGGSNGG GVPPGFRFHP TDEELLHYYL KKKVSFQKFD MEVVREVDLN KIEPWDLQEK  60
CRIGSTPQNE WYFFSHKDRK YPTGSRTNRA TNAGFWKATG RDKCIRNSYK KIGMRKTLVF  120
YRGRAPHGQK TDWIMHEYRL EDADDPLSNN SEDGWVVCRV FKKKNLFKVT NEGVGGGGGS  180
SANSDQHLNN NAHSSASIAT PHTFMQRESQ YQLRQPQQNY ASHPTFELNK SDLALHYIPT  240
PPPPSHNFPH HHLFHSNLST LKPLPGSSAA YDYPALSSLP PDAPLMVKQL MSNNPETGQP  300
TDGMTEPWAM LDRLVTSHLG NEDSSKDVRF EDEHGSSSVS QINQLSLRGE MDFWGYAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216517167NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216517167NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216517167NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216517167NO APICAL MERISTEM PROTEIN
4dul_A2e-511216517167NAC domain-containing protein 19
4dul_B2e-511216517167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459499.10.0PREDICTED: protein BEARSKIN2-like
SwissprotQ9SV871e-147BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1S3CBJ40.0A0A1S3CBJ4_CUCME; protein BEARSKIN2-like
STRINGXP_008459499.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-142NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]