PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012305

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 445aa MW: 49329 Da PI: 7.1637

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012305	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.6e-32	236	291	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cla012305 236 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 291 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-17	233	294	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.355	233	293	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-28	234	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-26	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	238	289	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MLLKHSFGDH EEQLGGNNNY DEYSYDKLQE FVTRLEEERL KIDVFKRELP LCMQLLTNAV 60 ETSRRQLEAW KTVEAVPAKP VLEEFMPLKI STPAEEEKPP TIMSDKANWM TSVQLWSRAA 120 DVSKHKSTPN NNESTNCNDS NNNNSETCND QRINNNGAFV PFNKDRSSGP GLGLGGGEKM 180 ELLEKAEKKN NINCSDNIKS GNNDNNGGVG MAVDQSSENG AAEVGSAPTT TQTHRKARRC 240 WSPDLHRRFV NALQMLGGSQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPGPTQQ 300 ASGPPAAQLV VLGLGGLWVP PEYAAAAAAA PPALYGPPPT SHPPSHFYTP PSLPQEFYTR 360 TGPAPHLQHH HQVQLYKGAP QSSPESEVRD TAERSESFEE EKSGSSSWRI EGCENGDDRI 420 INGRGSCGRR SDRKRMKKVI EVKLL

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MLLKHSFGDH EEQLGGNNNY DEYSYDKLQE FVTRLEEERL KIDVFKRELP LCMQLLTNAV  60
ETSRRQLEAW KTVEAVPAKP VLEEFMPLKI STPAEEEKPP TIMSDKANWM TSVQLWSRAA  120
DVSKHKSTPN NNESTNCNDS NNNNSETCND QRINNNGAFV PFNKDRSSGP GLGLGGGEKM  180
ELLEKAEKKN NINCSDNIKS GNNDNNGGVG MAVDQSSENG AAEVGSAPTT TQTHRKARRC  240
WSPDLHRRFV NALQMLGGSQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPGPTQQ  300
ASGPPAAQLV VLGLGGLWVP PEYAAAAAAA PPALYGPPPT SHPPSHFYTP PSLPQEFYTR  360
TGPAPHLQHH HQVQLYKGAP QSSPESEVRD TAERSESFEE EKSGSSSWRI EGCENGDDRI  420
INGRGSCGRR SDRKRMKKVI EVKLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-14	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-14	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-14	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-14	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681810	3e-81	LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBank	LN713256	3e-81	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463337.1	0.0	PREDICTED: transcription activator GLK1-like
TrEMBL	A0A1S3CJ16	0.0	A0A1S3CJ16_CUCME; transcription activator GLK1-like
STRING	XP_008463337.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-76	G2-like family protein