PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012262

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C3H

Protein Properties

Length: 504aa MW: 57513.6 Da PI: 7.974

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012262	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	86	106	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg Cla012262 86 PCYFYFN-GYCSKGDTCSFLHG 106 7999999.*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15663	2.7E-11	6	63	No hit	No description
PROSITE profile	PS50103	10.512	6	35	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.097	7	34	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.751	37	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.14	39	62	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.155	81	108	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-6	81	106	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.018	82	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-5	86	107	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MGEELRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNAACGFRH 60 PPMDSPAGKV LESSQCSVPV NKTNIPCYFY FNGYCSKGDT CSFLHGNDIT VAARSTKTGF 120 PGGNTSSSED KTASANKKEL ASTDADALFH PSKKELVSSP PAEESNDSRS HVHVAADQSY 180 EEPMTDSTEG ENLWESSPGF DVVVGDGSEN LDSDDDPEYI LSTDLERREL DSELCRDNFE 240 DLIECEPMHS DLELLYEREM HSYDHLEGEP VVYKDRNIMS CSRGKFIGSM FSRKRKLTLV 300 NLDSEDWNCA DRRSHLSRDR VYGNRPIIGL SRRRNGLSCQ MSRNFAKPRM HGLYHPPFGR 360 RLALQVRKIS RGAFPENLTF SNSCSRHESF RRSRQYMPCR HYDGYRSARQ QQPLLNMSRK 420 PVLREPIIRD HRFNLKSVPF KGPKTLSQIR EEKRKVEENG GFSREKCPSV RFASSLADFR 480 GPKPLSDILK DKRKVVEVVK EINT

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MGEELRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNAACGFRH  60
PPMDSPAGKV LESSQCSVPV NKTNIPCYFY FNGYCSKGDT CSFLHGNDIT VAARSTKTGF  120
PGGNTSSSED KTASANKKEL ASTDADALFH PSKKELVSSP PAEESNDSRS HVHVAADQSY  180
EEPMTDSTEG ENLWESSPGF DVVVGDGSEN LDSDDDPEYI LSTDLERREL DSELCRDNFE  240
DLIECEPMHS DLELLYEREM HSYDHLEGEP VVYKDRNIMS CSRGKFIGSM FSRKRKLTLV  300
NLDSEDWNCA DRRSHLSRDR VYGNRPIIGL SRRRNGLSCQ MSRNFAKPRM HGLYHPPFGR  360
RLALQVRKIS RGAFPENLTF SNSCSRHESF RRSRQYMPCR HYDGYRSARQ QQPLLNMSRK  420
PVLREPIIRD HRFNLKSVPF KGPKTLSQIR EEKRKVEENG GFSREKCPSV RFASSLADFR  480
GPKPLSDILK DKRKVVEVVK EINT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465025.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
TrEMBL	A0A1S3CPG0	0.0	A0A1S3CPG0_CUCME; zinc finger CCCH domain-containing protein 34-like isoform X1
STRING	XP_008465025.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13092	18	23