PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012144

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 323aa MW: 36583.3 Da PI: 6.5217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012144	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.2e-56	11	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdee+v++yL +k+++ ++++ ++i e+d++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkd+e+++ k+ l Cla012144 11 LPPGFRFHPTDEEIVTYYLSQKIANPTFTA-TAIGEADLNKCEPWDLPQKAKMGEKEWYFFCQRDRKYPTGMRTNRATQTGYWKATGKDREIFKGKSVLA 109 79***********************999.88***********99999**************************************99999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrap+gekt+Wvmhe+rle Cla012144 110 GMKKTLVFYKGRAPRGEKTNWVMHEFRLE 138 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-61	8	164	IPR003441	NAC domain
PROSITE profile	PS51005	57.766	11	163	IPR003441	NAC domain
Pfam	PF02365	7.2E-29	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEEPPSTAVN LPPGFRFHPT DEEIVTYYLS QKIANPTFTA TAIGEADLNK CEPWDLPQKA 60 KMGEKEWYFF CQRDRKYPTG MRTNRATQTG YWKATGKDRE IFKGKSVLAG MKKTLVFYKG 120 RAPRGEKTNW VMHEFRLEPK YSHFLRHARP VKDDWVVFRV FHKNPTTSST TLVGRIQTSD 180 FSSSLPPLMD PSASCIPINA GFDDFEAKYR PPKPSDYNYL KYMSIGTNDH QPEATLPSLA 240 TSAAMTMNVP FPSSVPDDEF FSFDQLAAGG TTSITPLPTT MERKMEQVSW STMSGVTQDM 300 SPSIENSGYV AADMADLDLW DYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	2	167	8	169	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	2	167	8	169	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	2	167	8	169	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	2	167	8	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	2	168	11	173	NAC domain-containing protein 19
3swm_B	1e-52	2	168	11	173	NAC domain-containing protein 19
3swm_C	1e-52	2	168	11	173	NAC domain-containing protein 19
3swm_D	1e-52	2	168	11	173	NAC domain-containing protein 19
3swp_A	1e-52	2	168	11	173	NAC domain-containing protein 19
3swp_B	1e-52	2	168	11	173	NAC domain-containing protein 19
3swp_C	1e-52	2	168	11	173	NAC domain-containing protein 19
3swp_D	1e-52	2	168	11	173	NAC domain-containing protein 19
4dul_A	9e-53	2	167	8	169	NAC domain-containing protein 19
4dul_B	9e-53	2	167	8	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441966.1	1e-162	PREDICTED: NAC domain-containing protein 79-like
Swissprot	Q9FK44	4e-95	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S3B442	1e-160	A0A1S3B442_CUCME; NAC domain-containing protein 79-like
STRING	XP_008441966.1	1e-161	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-97	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]