PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla012091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | G2-like | ||||||||
Protein Properties | Length: 301aa MW: 32437.4 Da PI: 6.8788 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.7 | 1.7e-30 | 97 | 150 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Cla012091 97 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 150 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-20 | 94 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 94 | 153 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 96 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-24 | 98 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 100 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MREEHSNWFS RWEEELPSPD ELMPLSQTLI TPDLALAFDI QNPSNSSPPL PCPSPPLSNP 60 LPGSGNGIAQ PNSADFGDSA DLGSGAASDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK 120 NAVPKTIMQL MSVDGLTREN VASHLQKYRL YLKRMQGLSS GGGGGGGGLV ASSDPATDHL 180 FASSPVPPHL LHSARTSSDH FLPFVPMATL QQHHHHQQQM AAAAAVAVHP QLQPPYHRQV 240 GHFGSPPNGQ FEHPFLARQS QPIHRMGAPV PNSVPNYIED LESANASGGR KVLTLFPTGD 300 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-32 | 97 | 153 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681878 | 0.0 | LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022966125.1 | 1e-165 | transcription factor MYBC1-like | ||||
Swissprot | O22210 | 1e-63 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0A0L0V3 | 1e-163 | A0A0A0L0V3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144322.1 | 1e-164 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-91 | G2-like family protein |
Publications ? help Back to Top | |||
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