PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011988
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 138aa    MW: 15293.2 Da    PI: 8.2125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011988genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16757155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+ 
  Cla011988  7 KKYKGVRRRK-WGKWVSEIRVP---G-SqERLWLGSYSSPEAAAVAHDVAYYCLRR 57
               59*****998.**********8...4.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-24767No hitNo description
Gene3DG3DSA:3.30.730.108.2E-25867IPR001471AP2/ERF domain
PfamPF008475.4E-9856IPR001471AP2/ERF domain
SMARTSM003803.8E-24873IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17867IPR016177DNA-binding domain
PROSITE profilePS5103221.311867IPR001471AP2/ERF domain
PRINTSPR003674.7E-8920IPR001471AP2/ERF domain
PRINTSPR003674.7E-83147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MASSETKKYK GVRRRKWGKW VSEIRVPGSQ ERLWLGSYSS PEAAAVAHDV AYYCLRRPSN  60
LDHLNFPPMV LPLTNHLLIR DDMSPGSIQK AASDAAMAVD AQYICNSLAD PGSRGRAGAG  120
DDNYTPPNHQ DLSIQDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441160.16e-84PREDICTED: ethylene-responsive transcription factor ERF019
SwissprotQ9C9I82e-40ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3B2T21e-82A0A1S3B2T2_CUCME; ethylene-responsive transcription factor ERF019
STRINGXP_008441160.12e-83(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.19e-35ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]