PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011852
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 308aa    MW: 34351.5 Da    PI: 6.6051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011852genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.4e-13242266226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ktelC+ +++tG C+yG+ C+FaHg
  Cla011852 242 KTELCNKWQETGGCPYGGHCRFAHG 266
                9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-17236273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10237272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103240268IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-8240267IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-11242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-13274307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8275306IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544278306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEEEMCPPLP SSLSSTTEVS ADEMEDFSLH FASMYHSIFP PLLSSSSLPT SLSFTPSPSS  60
SSADDDHNHH CTTAATSATD DLLFQARLIL EHRHLRHRHD LCLRRLRQVA EDADYLRQEN  120
AQLRLANAEL VKVISSKTAV DDLISIPNSH LRSLIGGGEE IGYDIISPTS VIGKYNDQFD  180
GTNNFRRISL PKSISIRSAT AAAAAPLNIQ SRGACTPVSN GRSRNREEEA VELEVYNQGM  240
TKTELCNKWQ ETGGCPYGGH CRFAHGLEEL RPVMRHPRYK TQMCRMVLAG ENCPYGHRCH  300
FRHSLTEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-182423071176Tristetraproline
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195106RHRHDLCLRRLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138800.11e-178PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_011649940.11e-178PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0A0LQS71e-176A0A0A0LQS7_CUCSA; Uncharacterized protein
STRINGXP_004138800.11e-177(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-50C3H family protein