PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011694
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 299aa    MW: 31316.5 Da    PI: 9.5442
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011694genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063558225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  Cla011694 35 KSKPCTKFFSTAGCPFGESCHFLH 58
               7789******************** PP
2zf-CCCH27.55.5e-09102127227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C+ +     Ck+Gd+C+FaHg+
  Cla011694 102 KTRMCNKYNTAEGCKFGDKCNFAHGE 127
                89**********************96 PP
3zf-CCCH38.22.4e-12266290126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC++fa+ G C +G+rC+FaHg
  Cla011694 266 YKTKLCDNFAK-GSCTFGERCHFAHG 290
                9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-63359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-899131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619100128IPR000571Zinc finger, CCCH-type
SMARTSM003560.041100127IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.09E-16161242IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.9E-17171240IPR004088K Homology domain, type 1
SMARTSM003227.3E-13171241IPR004087K Homology domain
PROSITE profilePS5008414.739172236IPR004088K Homology domain, type 1
PfamPF000135.8E-12174238IPR004088K Homology domain, type 1
CDDcd001051.99E-15174236No hitNo description
Gene3DG3DSA:4.10.1000.109.9E-17261296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-9264295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558265292IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8265291IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDMRKRGRPE AAFNSNGAFK KHKQELEPLS TVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNVVAQM MNLAPVGSQP SRNMAAPPSV TNGGSSAPSQ VKTRMCNKYN TAEGCKFGDK  120
CNFAHGEWEL GRPNPPSHDN PRAMGGGGHM VGRMGGRMDL PPPGPAASFG ASATAKISID  180
ASLAGAIIGK GGINSKQICR QTGAKLSIRD HESDPNLRNI ELEGTFEQIN EASAMVRELI  240
ITVSIAGPGK ASGGMGGGPA PTGSNYKTKL CDNFAKGSCT FGERCHFAHG AAELRKSGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442098.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3B4W90.0A0A1S3B4W9_CUCME; zinc finger CCCH domain-containing protein 36-like
STRINGXP_008442098.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-55C3H family protein