PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011667
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 306aa    MW: 34031.9 Da    PI: 6.7021
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011667genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.4e-32224278155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWt++LHe+Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Cla011667 224 KTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 278
                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-17222278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28223279IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23224279IPR006447Myb domain, plants
PfamPF002491.7E-8228277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNDYGIDSKQ EIQQNHGLIT DCYSQNFRAQ QPWRMGACVH LSAMDEVESS EQLNLCPSKS  60
SSTIINLFES PTSAFFATEQ CMGIPPIQFQ SGSSSFDMAS DSLSTIFQSS GENFPLDSAE  120
HSGVDSEFSN TLQSVVKSQL CKRSFNGFPK TSFAEHKVFD ESSLAIRKHY SVPFKDQVVS  180
YNSIAQPSFC SSQEKNSPRF SCLSASVGSG SSSSSFNGNG FTTKTRIRWT QDLHEKFVDC  240
VNRLGGAEKA TPKAILKLMD SEGLTIFHVK SHLQKYRIAK YMPESAERRS DRRNCMNEVT  300
ELDAKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-24224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-24224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-24224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-24224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24224281259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442127.11e-177PREDICTED: uncharacterized protein LOC103486080 isoform X1
TrEMBLA0A1S3B5001e-175A0A1S3B500_CUCME; uncharacterized protein LOC103486080 isoform X1
STRINGXP_008442127.11e-176(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.24e-43G2-like family protein